PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027182936.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 253aa    MW: 27771.5 Da    PI: 9.788
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027182936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA903.3e-2896150358
       CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p+ VNaKQy++Il+RR  Rak e+++k+  k rkpylheSRhkhA+rRpRgsgGrF
  XP_027182936.1  96 PVLVNAKQYRAILRRRRIRAKHEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 150
                     99**************************.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MADAARNSTS GDETHGRRAE QYQRSPLLCV SADFTVSQVQ LDYNKSLACI PFPSSESYFG  60
GLVAAYGPNA LVCPPMVGML HARVPLPPLQ CAEGMPVLVN AKQYRAILRR RRIRAKHEAQ  120
NKMLKFRKPY LHESRHKHAV RRPRGSGGRF LNTKDIKPSN LSSPSYTEDA PLKMLAGDIS  180
GSEARLSESC SWAASTPSGS DVTSIFNGDD IFQHPENQVS ASSFHMGMRV GKDSTHLEAG  240
NLLFLSIDGR ARN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135144RHKHAVRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-39NF-YA family protein