PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183045.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 273aa MW: 30270.8 Da PI: 7.4611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l++ +G+g +W t +++ g++R++k+c++rw++yl XP_027183045.1 14 RGPWSPEEDQILKKHLLDYGTGgNWITLPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	48.2	2.6e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd+l+ + ++G++ W+ Ia+ ++ gRt++++k++w++ XP_027183045.1 69 GPFTPEEDDLICTLYSKMGSR-WSIIASQLP-GRTDNDVKNHWNS 111 89*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRTPCCDKT KVKRGPWSPE EDQILKKHLL DYGTGGNWIT LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGP FTPEEDDLIC TLYSKMGSRW SIIASQLPGR TDNDVKNHWN SKLKKKQLAA 120 SIRKPASNTA NNNSSRPDSF TSTTSTTTPY SLETQAGAFH PKFSAHLSNL STEDYTDISV 180 GTEGSKVCSS SSKTIEYMSS SSQAQEDSII SESTSFGTVT NTINNSMPWL DDYGAIDRGL 240 PMEMTGTAAY SYEILSGIWA QETVLEALHD PYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-65	MYB family protein