PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027183459.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22991.9 Da    PI: 9.36
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027183459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161057249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie+k +rqvtf+kRr+g++KKA+ L+   + e+ +i fs  g++y +
  XP_027183459.1 10 KIEDKAKRQVTFTKRRQGLFKKASALCNISNYEIGIITFSLAGNMYAW 57
                    59********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MVRKKVDIVK IEDKAKRQVT FTKRRQGLFK KASALCNISN YEIGIITFSL AGNMYAWGHP  60
TVDSVLKRYM ADRAQKPDEN HQENETSPGD HHQNKREVSL ALSLSLPADE KETPERSDEG  120
KAGQEKGLVL KNNNNNSSNQ EGEKRVEGHA AAAKSKVMAS WNLPKVDDLE IDELERLMAD  180
MEEMKKKVVD RANQMKSSAG RVPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23M-type_MADS family protein