PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183745.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 180aa MW: 20241.1 Da PI: 5.0219

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.8	2.8e-41	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+++Cvlapyfp+++p +f +vhk++Gasn+++ l++lpe++r+d ++s+vyeA ar+rdPvyG++g++++lqqq+ l++ela XP_027183745.1 13 PCAACKSLRRRCSDECVLAPYFPSSEPLRFTIVHKVYGASNIVRRLQELPEHQRSDSINSMVYEAAARIRDPVYGCAGTVTQLQQQILGLQEELA 107 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027183745.1 108 KAQAE 112 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MESGRRQQNT VYPCAACKSL RRRCSDECVL APYFPSSEPL RFTIVHKVYG ASNIVRRLQE 60 LPEHQRSDSI NSMVYEAAAR IRDPVYGCAG TVTQLQQQIL GLQEELAKAQ AEILNMQCQI 120 ANLVSLIWME MFPSQEQETI SVSGLQQDII HMPEKQPLDD SDTTNGSLEP LCTHEKAMGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-53	LBD family protein