PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183777.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 152aa MW: 16883.1 Da PI: 7.9377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.5e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+++C+l+p+fp ++p++fa+vhk++Gasnv k+l+++p ++r +a+++++yeA +r++dPvyG+vg+i lqqq+ ++ +la XP_027183777.1 5 RCAGCKYLRRRCPSNCILSPHFPPNDPQRFACVHKIYGASNVAKMLQQVPVQQRAEAANAMYYEAYCRIKDPVYGCVGTIALLQQQIFDAECQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027183777.1 100 KIQAE 104 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence
MNSKRCAGCK YLRRRCPSNC ILSPHFPPND PQRFACVHKI YGASNVAKML QQVPVQQRAE 60 AANAMYYEAY CRIKDPVYGC VGTIALLQQQ IFDAECQLAK IQAEIAVLNG HHEATHQNQQ 120 VNVATSSANF TLESGGEGTF SSTYDPSICQ FY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	8e-49	LBD family protein