PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183792.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 331aa MW: 36954.2 Da PI: 7.0691

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.9e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_027183792.1 13 RGLWSPEEDEKLVKHITAHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	52.9	8.8e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_027183792.1 66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLVKHITA HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSV IKKKLIAQGL 120 DPNTHNLLSP HQTKAKNNGN TISKLNSHHQ ESGSVFTMDT SPGNKEIIDA KSTLSLPSSY 180 INSSALNGAS SITTFEFQNP SNLAWTDHGT HSSHQQSMME FSSCSSMEST PISTSSLPSS 240 GFGILAENCM WGNGFEPCFD HAPPQQQQQP EKVSTDQEKV YRVSNHEFNG CQNAENGFDS 300 SNIDFEFMDS ALVPPGMYCN VNSMDQLAWD C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-81	MYB family protein