PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027183987.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17518.6 Da    PI: 10.57
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027183987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.46e-112775149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+k ++   f  R+ g++KKA  L  L da va+i +s+ gk+ ey
  XP_027183987.1 27 KKIEDKKKQRDIFEARQRGLFKKARQLVQLYDAGVALITISEVGKISEY 75
                    689999999999************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MDGYYVQNSL NRDNQEITEG KRKLEVKKIE DKKKQRDIFE ARQRGLFKKA RQLVQLYDAG  60
VALITISEVG KISEYGNPTL DSILQRYQEA KKGEAAVKAS NDVQPQKLTM IFSHKQRIFP  120
NMMLMKQRKA LMMMIRTFLI KKYEITVKW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12134KRKLEVKKIEDKKK
22235KRKLEVKKIEDKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.11e-09M-type_MADS family protein