PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027184548.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 474aa MW: 51654.5 Da PI: 8.6809

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027184548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.5e-12	88	113	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C+yG++C+F+H+p XP_027184548.1 88 GEPDCSYYIRTGLCRYGATCRFNHPP 113 6899********************97 PP
2	zf-CCCH	39.6	8.5e-13	133	158	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_027184548.1 133 GQPECQYYLKTGTCKFGATCKFHHPR 158 5799********************96 PP
3	zf-CCCH	35.9	1.3e-11	182	204	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_027184548.1 182 ECAYYLRTGHCKFGSTCKFHHPQ 204 7********************97 PP
4	zf-CCCH	38.5	1.9e-12	336	362	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_027184548.1 336 PGQPECQFYMKTGDCKFGAVCKFHHPR 362 5789*********************96 PP
5	zf-CCCH	40	6.4e-13	382	408	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_027184548.1 382 PGEPLCIFYSRYGICKFGPSCKFDHPM 408 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MPVLAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS 60 SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA 120 TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE 180 IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI 240 PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMVGQSEA 300 ANVGSQGIHS SYSSSSLPIG YYALQLQRET VFPERPGQPE CQFYMKTGDC KFGAVCKFHH 360 PRERILPAPD CGLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNVSSSST 420 EPPTVRRLLG SSSGTGPLTL ASEGLVEASS TKSRLLPLSE ARKPSGDTSI DPEE

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MPVLAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS  60
SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA  120
TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE  180
IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI  240
PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMVGQSEA  300
ANVGSQGIHS SYSSSSLPIG YYALQLQRET VFPERPGQPE CQFYMKTGDC KFGAVCKFHH  360
PRERILPAPD CGLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNVSSSST  420
EPPTVRRLLG SSSGTGPLTL ASEGLVEASS TKSRLLPLSE ARKPSGDTSI DPEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein