PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027184549.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 443aa MW: 48514.2 Da PI: 8.7786

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027184549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.7e-12	88	113	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C+yG++C+F+H+p XP_027184549.1 88 GEPDCSYYIRTGLCRYGATCRFNHPP 113 6899********************97 PP
2	zf-CCCH	39.7	7.9e-13	133	158	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_027184549.1 133 GQPECQYYLKTGTCKFGATCKFHHPR 158 5799********************96 PP
3	zf-CCCH	36	1.2e-11	182	204	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_027184549.1 182 ECAYYLRTGHCKFGSTCKFHHPQ 204 7********************97 PP
4	zf-CCCH	38.6	1.8e-12	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_027184549.1 305 PGQPECQFYMKTGDCKFGAVCKFHHPR 331 5789*********************96 PP
5	zf-CCCH	40.1	5.9e-13	351	377	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_027184549.1 351 PGEPLCIFYSRYGICKFGPSCKFDHPM 377 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MPVLAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS 60 SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA 120 TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE 180 IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI 240 PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMLQRETV 300 FPERPGQPEC QFYMKTGDCK FGAVCKFHHP RERILPAPDC GLSPIGLPLR PGEPLCIFYS 360 RYGICKFGPS CKFDHPMGVF TYNVSSSSTE PPTVRRLLGS SSGTGPLTLA SEGLVEASST 420 KSRLLPLSEA RKPSGDTSID PEE

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MPVLAVGDGN HRHSDSSKII SIIIIIIINK IKISSRSRIS MDFDSGIPIS RASVVAEGSS  60
SLDQDALWQI NLRSREPMEA GTYPVREGEP DCSYYIRTGL CRYGATCRFN HPPNRKLAIA  120
TARMRGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPREK AGIAGRVTLN ALGYPLRPNE  180
IECAYYLRTG HCKFGSTCKF HHPQPANMMV SVRGSPVYPS VHSPTNPGQL SYPLSRASFI  240
PNPRWQGPSS YAPVLVPQSM VSVSGWNAYS GQLGSGSSAE SQQQTAGNDQ THGMLQRETV  300
FPERPGQPEC QFYMKTGDCK FGAVCKFHHP RERILPAPDC GLSPIGLPLR PGEPLCIFYS  360
RYGICKFGPS CKFDHPMGVF TYNVSSSSTE PPTVRRLLGS SSGTGPLTLA SEGLVEASST  420
KSRLLPLSEA RKPSGDTSID PEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-179	C3H family protein