PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027184573.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 239aa MW: 26529.8 Da PI: 7.3906

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027184573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.0003	187	223	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+r+++ Lr ++P a ++ +++L +Av+Y+ksL XP_027184573.1 187 RQRMRKMVKALRGIVPGA-----HQMDTVAVLDEAVRYLKSL 223 899999999******8.....58*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MQKNQQLFPR KPFLSPANEA GGYMLSAPIS SVFGETICPP GATGLWPLHD VEFRPSETCP 60 RNFIIFDQTD NRSQIMLHPA TGSRFCYPGS NTWAAPSEYK AVKFADNEHR EVTSLKEDSD 120 DINALLSSDD EHEECDDDEL STARANVYCG SNSPDSCSNY DSPPRKTRIT SSRKTSGDVS 180 SCTGRKRQRM RKMVKALRGI VPGAHQMDTV AVLDEAVRYL KSLKVEVQKL GVGKLKSYT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	RKRQRMR
2	186	191	KRQRMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.1	2e-26	bHLH family protein