PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027184835.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24197.8 Da    PI: 9.8243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027184835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027184835.1  9 KRIENAASRQVTFSKRRRGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59
                    79***********************************************96 PP
2K-box72.31.4e-2482172999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + +++++ ++e+a L+k++e L++++R+llG++L++ s+ eLqq+e qLe+sl+ iRs+K+ l+ eqi++l++ ek l++en +Lr+k++
  XP_027184835.1  82 MALQHSQNFEEEVAILRKKLEILEETKRKLLGDGLDTSSFDELQQIEGQLERSLNIIRSRKSLLFWEQIDHLKEEEKILRKENAELREKYD 172
                     566899**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MVRGKTQIKR IENAASRQVT FSKRRRGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS  60
SATSTIERYQ KNIRNLCPSE KMALQHSQNF EEEVAILRKK LEILEETKRK LLGDGLDTSS  120
FDELQQIEGQ LERSLNIIRS RKSLLFWEQI DHLKEEEKIL RKENAELREK YDQQRLGPSI  180
SRQPLSLRQV KEIETRLFIG LPESSNYP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-70MIKC_MADS family protein