PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027184837.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23749.4 Da    PI: 10.153
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027184837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027184837.1  9 KRIEDATTRQVTFSKRRKGLLKKAYELSVLCDAEVALIIFSPSGKLYEFSS 59
                    79***********************************************96 PP
2K-box66.11.2e-22811738100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + + +  ++ ++e+a L+k+ie L+++ R+llG++L+s s+ eLqq+e+qLeksl+ iRs+K  l++e i++l++  k l+++n +Lr+k+ee
  XP_027184837.1  81 QMDLERLQHFEEEVAILRKKIELLEETTRKLLGDGLDSSSIGELQQVERQLEKSLSIIRSRKILLFCERINQLKEEGKILRKKNAELREKYEE 173
                     46667889**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MARGKTQIKR IEDATTRQVT FSKRRKGLLK KAYELSVLCD AEVALIIFSP SGKLYEFSSS  60
SSRSTIERYQ KSIKNRPTSK QMDLERLQHF EEEVAILRKK IELLEETTRK LLGDGLDSSS  120
IGELQQVERQ LEKSLSIIRS RKILLFCERI NQLKEEGKIL RKKNAELREK YEERQLELSI  180
GQQFSSLEQV KEVETQLFIG LPNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-69MIKC_MADS family protein