PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027184838.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23580.2 Da    PI: 10.0233
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027184838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.55e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fs++gkl+e+ss
  XP_027184838.1  9 KRIENSTSRQVTFSKRRKGLLKKAFELSVLCDAEVALIVFSPSGKLFEFSS 59
                    79***********************************************96 PP
2K-box67.64.3e-238117110100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +  ++++ ++e+a L+k+ie L++++R++lG++L+s s+ eL+q+e+qLeksl+ iRs+K  l++e i++l++  k l+++n +Lr+k+ee
  XP_027184838.1  81 QMDDSQHFEEEVAILRKKIELLEETKRKFLGDGLDSSSIDELEQIEHQLEKSLRIIRSRKILLFCERINQLKEEGKILRKKNAELREKYEE 171
                     5567899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MVRGKTQIKR IENSTSRQVT FSKRRKGLLK KAFELSVLCD AEVALIVFSP SGKLFEFSSS  60
SATSTTERYR KCIKNLRPSK QMDDSQHFEE EVAILRKKIE LLEETKRKFL GDGLDSSSID  120
ELEQIEHQLE KSLRIIRSRK ILLFCERINQ LKEEGKILRK KNAELREKYE ERQLELSIGQ  180
QFSSLEQVKE VETQLFIGLP NR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-64MIKC_MADS family protein