PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027185590.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 206aa MW: 22456.7 Da PI: 4.9948

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027185590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.5	1e-42	51	150	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk+FGasn++k+l++lpe++r da++s+vyeA+ r+rdPvyG++g i +lq+q+++l+aela XP_027185590.1 51 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHKVFGASNIIKMLQELPEDQRADAVNSMVYEANSRIRDPVYGCAGAICQLQKQISELQAELA 145 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027185590.1 146 KAQAE 150 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MECSSTTTTT TTMCAASQNQ PLSPSSSPSL SPRAGSPKNG PPSPPPVILS PCAACKILRR 60 RCAEKCVLAP YFPPTEPLKF TIAHKVFGAS NIIKMLQELP EDQRADAVNS MVYEANSRIR 120 DPVYGCAGAI CQLQKQISEL QAELAKAQAE MLNFQCQNDN LKSLICMGMA AQDDQEIKSE 180 QHLSCDNTSL FLDDANIYAA WEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-65	LBD family protein