PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027329340.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 484aa MW: 50609.5 Da PI: 8.4502

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027329340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.5e-12	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H+p XP_027329340.1 48 DEADCIYYLRTGSCGYGSRCRFNHPP 73 6799********************97 PP
2	zf-CCCH	37.9	2.9e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_027329340.1 95 QPVCQYYMRTGSCKFGASCKYHHPR 119 689********************96 PP
3	zf-CCCH	34.9	2.6e-11	141	165	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ XP_027329340.1 141 EKECSYYVKTGHCKFGATCKFHHPQ 165 689********************97 PP
4	zf-CCCH	37.7	3.4e-12	306	331	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++C+++H+p XP_027329340.1 306 DQPECHYYMKTGECKFGPSCRYHHPP 331 689*********************97 PP
5	zf-CCCH	30.8	5.1e-10	353	377	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++ + G Ck+G+ CkF H++ XP_027329340.1 353 APPCTHYTQRGVCKFGSACKFDHPM 377 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MERYGRASEG SQSDPSPEWT VAGGDTGLEE SSWQPGFAAG ESYPLRPDEA DCIYYLRTGS 60 CGYGSRCRFN HPPKRASVIG AGTRTGGEYP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ 120 AAGTANPVSL NYYGYPLRMG EKECSYYVKT GHCKFGATCK FHHPQPAGVQ IVAPSPVPPV 180 SPLPVPVPSP IYPTVQSPSG PSSQQYGVFV ARPPMLPGSV VQGPYGPVVV SPAMVPFSGW 240 GPYQAPATSP VLPSSTPSSV GSTQIYGITQ LPSSATGYTG PYQPSGPSIG SLGTSQKEHP 300 FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKSAPKANV ILSPVGLPLR PGAPPCTHYT 360 QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SAIGTLAPSS SSSELRPELG 420 AGSSKESVSS RMSSSMSTST ASVGLTLSTA GAVSQSSTQP SAQSSSSSTT TNATTSSTVS 480 HTSS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MERYGRASEG SQSDPSPEWT VAGGDTGLEE SSWQPGFAAG ESYPLRPDEA DCIYYLRTGS  60
CGYGSRCRFN HPPKRASVIG AGTRTGGEYP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ  120
AAGTANPVSL NYYGYPLRMG EKECSYYVKT GHCKFGATCK FHHPQPAGVQ IVAPSPVPPV  180
SPLPVPVPSP IYPTVQSPSG PSSQQYGVFV ARPPMLPGSV VQGPYGPVVV SPAMVPFSGW  240
GPYQAPATSP VLPSSTPSSV GSTQIYGITQ LPSSATGYTG PYQPSGPSIG SLGTSQKEHP  300
FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKSAPKANV ILSPVGLPLR PGAPPCTHYT  360
QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SAIGTLAPSS SSSELRPELG  420
AGSSKESVSS RMSSSMSTST ASVGLTLSTA GAVSQSSTQP SAQSSSSSTT TNATTSSTVS  480
HTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-140	C3H family protein