PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027330387.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27139.7 Da    PI: 8.3884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027330387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.5e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027330387.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                    79***********************************************96 PP
2K-box86.55.3e-298817216100
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +qe+ +Lk+++e Lqr+qR+llGedL +++  eL+qLe+qLe +l++iRs+K++++l+q+ +l ++e  l e+n+ Lr+klee
  XP_027330387.1  88 QNYQEYLRLKAKVEVLQRSQRNLLGEDLAQMNTTELEQLENQLEAALRNIRSTKTQFMLDQLADLHNRETVLVETNNVLRSKLEE 172
                     4579******************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SSMMKTLEKY QKYSYSALET TRPINDIQNY QEYLRLKAKV EVLQRSQRNL LGEDLAQMNT  120
TELEQLENQL EAALRNIRST KTQFMLDQLA DLHNRETVLV ETNNVLRSKL EETNNSQVPA  180
GGALEGGGPN IHYTNFPSQT EGFFQPVGVN PNLQIGYNPT GPDDGASSLN MHGFASGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-83MIKC_MADS family protein