PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027332023.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 418aa MW: 45665.3 Da PI: 7.9212

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027332023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ XP_027332023.1 48 PGEPDCLYYLRTGMCGYGSNCRYNHP 73 5789*********************8 PP
2	zf-CCCH	37.6	3.8e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_027332023.1 92 QPDCEYFLKTGTCKYGSTCKYHHPK 116 789********************96 PP
3	zf-CCCH	38.1	2.5e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ XP_027332023.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161 6********************97 PP
4	zf-CCCH	40.1	6.2e-13	272	297	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ XP_027332023.1 272 DQPECRYFMSTGTCKYGSDCKFHHPK 297 689*********************96 PP
5	zf-CCCH	34.8	2.8e-11	314	339	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ XP_027332023.1 314 PGQAICSYYRINGICKFGPTCKFDHP 339 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MPENRQVLRN ADSTPSGDNI EEAIRRLKIN DNRDRDAAAQ STQYPDRPGE PDCLYYLRTG 60 MCGYGSNCRY NHPAHVSLGT HYGEELPQRV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG 120 AAPVLFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASFGAYPL AGSPASTIIP 180 TSGLPYVGGF PAWSVSRMSY LSGQGLQSYV PPFLSSSQGM IPAPSWTNYM GSMNAAIPTG 240 FLGSNLVYDY MNPSESLSGG QVLNSALPDR PDQPECRYFM STGTCKYGSD CKFHHPKERI 300 AQSLINPLGL PVRPGQAICS YYRINGICKF GPTCKFDHPV LAIPQNYGLT SPTLTVIDAS 360 LISNPRGLST VQPSETSPSK VSSDKLQHSD TKAAAEDSSK QVDTTSNSLP PSSESLHD

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MPENRQVLRN ADSTPSGDNI EEAIRRLKIN DNRDRDAAAQ STQYPDRPGE PDCLYYLRTG  60
MCGYGSNCRY NHPAHVSLGT HYGEELPQRV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVLFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASFGAYPL AGSPASTIIP  180
TSGLPYVGGF PAWSVSRMSY LSGQGLQSYV PPFLSSSQGM IPAPSWTNYM GSMNAAIPTG  240
FLGSNLVYDY MNPSESLSGG QVLNSALPDR PDQPECRYFM STGTCKYGSD CKFHHPKERI  300
AQSLINPLGL PVRPGQAICS YYRINGICKF GPTCKFDHPV LAIPQNYGLT SPTLTVIDAS  360
LISNPRGLST VQPSETSPSK VSSDKLQHSD TKAAAEDSSK QVDTTSNSLP PSSESLHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-121	C3H family protein