PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027332024.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 358aa MW: 38818.8 Da PI: 8.2008

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027332024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.1e-12	32	56	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_027332024.1 32 QPDCEYFLKTGTCKYGSTCKYHHPK 56 789********************96 PP
2	zf-CCCH	38.4	2.1e-12	79	101	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ XP_027332024.1 79 SCPYYMRTGSCKFGVACKFHHPQ 101 6********************97 PP
3	zf-CCCH	40.3	5.1e-13	212	237	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ XP_027332024.1 212 DQPECRYFMSTGTCKYGSDCKFHHPK 237 689*********************96 PP
4	zf-CCCH	35.1	2.3e-11	254	279	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++CkF H+ XP_027332024.1 254 PGQAICSYYRINGICKFGPTCKFDHP 279 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MCGYGSNCRY NHPAHVSLGT HYGEELPQRV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG 60 AAPVLFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASFGAYPL AGSPASTIIP 120 TSGLPYVGGF PAWSVSRMSY LSGQGLQSYV PPFLSSSQGM IPAPSWTNYM GSMNAAIPTG 180 FLGSNLVYDY MNPSESLSGG QVLNSALPDR PDQPECRYFM STGTCKYGSD CKFHHPKERI 240 AQSLINPLGL PVRPGQAICS YYRINGICKF GPTCKFDHPV LAIPQNYGLT SPTLTVIDAS 300 LISNPRGLST VQPSETSPSK VSSDKLQHSD TKAAAEDSSK QVDTTSNSLP PSSESLHD

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MCGYGSNCRY NHPAHVSLGT HYGEELPQRV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  60
AAPVLFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASFGAYPL AGSPASTIIP  120
TSGLPYVGGF PAWSVSRMSY LSGQGLQSYV PPFLSSSQGM IPAPSWTNYM GSMNAAIPTG  180
FLGSNLVYDY MNPSESLSGG QVLNSALPDR PDQPECRYFM STGTCKYGSD CKFHHPKERI  240
AQSLINPLGL PVRPGQAICS YYRINGICKF GPTCKFDHPV LAIPQNYGLT SPTLTVIDAS  300
LISNPRGLST VQPSETSPSK VSSDKLQHSD TKAAAEDSSK QVDTTSNSLP PSSESLHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-103	C3H family protein