PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027333787.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 23898.8 Da PI: 11.2875

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027333787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.4	2.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eyss XP_027333787.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	77.6	3.1e-26	76	145	2	71
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++++ + ++a +e++ e+akLk+++e Lqr+qR+++Ge+L+sLs+keLq+LeqqL++++k+iRs+K+ XP_027333787.1 76 AERQLVGDDQAPNENWVIEHAKLKARMEVLQRNQRNFKGEELDSLSIKELQNLEQQLDSAIKRIRSRKSF 145 5666677778889*******************************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLFEYSSD 60 PCMERVIERY ERYSYAERQL VGDDQAPNEN WVIEHAKLKA RMEVLQRNQR NFKGEELDSL 120 SIKELQNLEQ QLDSAIKRIR SRKSFWVFTC RTKSCMNLFQ SFRKRIRHCR NITICSPRRL 180 RKKRRRWPNR SKGGFIITRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	185	RKRIRHCRNITICSPRRLRKKRR
2	178	186	RRLRKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-82	MIKC_MADS family protein