PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027336808.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 661aa MW: 72959.6 Da PI: 5.9403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027336808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	272	292	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_027336808.1 272 PCPEFRK-GSCSKGDACEYAHG 292 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MCSGYKRKPS QTGLIKGVEY GRQEGSHLKI SALLEFSATD DVMAFKDAVE IEGCDVDEVG 60 FWYGRRVGSK EVGFEERTPL MIAAMFGSKS VLSYILGTGH VDVNQACGSD GATALHCAVA 120 GGSAASPEVI KLLLDASADV STVDANGNRS CDLIVSVSNG VFNSRKRILQ AILEGADGID 180 EAYLRFDDAV QQYVYTPRSS KDGTEKKDYP VDLSLPDIKN GIYSTDEFRM YTFKVKPCSR 240 AYSHDWTECP FVHPGENARR RDPRKYQYSC VPCPEFRKGS CSKGDACEYA HGIFECWLHP 300 AQYRTRLCKD EIGCTRRVCF FAHKLEELRP VYASTGSAMP SSSSYSASAS SLDALTPPLT 360 PSQASSPVSG TMWQTQSHVA APTLQLSGSR LKTALNTRDA DSDIELLAHE NRQLMQQLKI 420 EEMAAVSSLS SASKWKRPMP PCLCNQIREL HRFAGVRPTN FEDIFGSQIQ SPTGIQVHQH 480 VKQQLRDYPS NFSTSRVIRS PSFSVDPSGT TAKMTLNPRD AAFSNRSQSF IDHSNVNCNS 540 EFPSLDTSVA FEPYGFSSWG SPDGKLDWAI CDDELNKLRK SSSFGFHSSN SPLKLASTTV 600 PPSVDEPDVS WVHSLVKDAA PMESEQYNCV EEQLQFHLND GKNVVPDNQE QLYMEHEQIV 660 A

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MCSGYKRKPS QTGLIKGVEY GRQEGSHLKI SALLEFSATD DVMAFKDAVE IEGCDVDEVG  60
FWYGRRVGSK EVGFEERTPL MIAAMFGSKS VLSYILGTGH VDVNQACGSD GATALHCAVA  120
GGSAASPEVI KLLLDASADV STVDANGNRS CDLIVSVSNG VFNSRKRILQ AILEGADGID  180
EAYLRFDDAV QQYVYTPRSS KDGTEKKDYP VDLSLPDIKN GIYSTDEFRM YTFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPRKYQYSC VPCPEFRKGS CSKGDACEYA HGIFECWLHP  300
AQYRTRLCKD EIGCTRRVCF FAHKLEELRP VYASTGSAMP SSSSYSASAS SLDALTPPLT  360
PSQASSPVSG TMWQTQSHVA APTLQLSGSR LKTALNTRDA DSDIELLAHE NRQLMQQLKI  420
EEMAAVSSLS SASKWKRPMP PCLCNQIREL HRFAGVRPTN FEDIFGSQIQ SPTGIQVHQH  480
VKQQLRDYPS NFSTSRVIRS PSFSVDPSGT TAKMTLNPRD AAFSNRSQSF IDHSNVNCNS  540
EFPSLDTSVA FEPYGFSSWG SPDGKLDWAI CDDELNKLRK SSSFGFHSSN SPLKLASTTV  600
PPSVDEPDVS WVHSLVKDAA PMESEQYNCV EEQLQFHLND GKNVVPDNQE QLYMEHEQIV  660
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein