PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027337505.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

M-type_MADS

Protein Properties

Length: 243aa MW: 27619.6 Da PI: 6.5282

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027337505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.5	5.5e-16	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r+ t+ kR+ng++KK E+S+LC++e++ ii+ ++ XP_027337505.1 11 IANDSKRKATLKKRKNGLIKKIDEISTLCGIEACAIIYTPN 51 89************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MTRKKVDLSY IANDSKRKAT LKKRKNGLIK KIDEISTLCG IEACAIIYTP NDPQPEVWPS 60 EWEVHRVLSK FKRVPELEQS KKMLNQESFL RQRIIKAQEQ LKKQKSENRK KEMTQLMFEY 120 LTAGKIFDNA SMMDLNDLSC LIDQNLKEIE RNINGQVQEV APMIENAGEI MNVGEAMNVG 180 ETMNGGEQAV HMNHVQGLET NVDAMHKQNW AMDFINGGGS GSDMLPFGDV NAQNGFWANP 240 YIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVDLSYIANDSKRKATLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	8e-52	M-type_MADS family protein