PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027339460.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24056.3 Da    PI: 9.3743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027339460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.23e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_027339460.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                    8***********************************************86 PP
2K-box86.74.6e-2979171698
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       + +e+++++l+qe a+L k+ie L+ ++R+llGe+L+s+sl+eLqq+e+qLe+s++++R++Kn+++++qie+l++kek l  en +L++++
  XP_027339460.1  79 IHRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEEQLERSVSSVRARKNQVYKDQIEQLKEKEKTLLAENAKLSEQY 171
                     344899***********************************************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQETIERYR RHNRSAQTIH RSDEQNMQHL KQETANLMKK IELLEASKRK LLGEGLGSCS  120
LEELQQIEEQ LERSVSSVRA RKNQVYKDQI EQLKEKEKTL LAENAKLSEQ YGIPPQPATW  180
DQRENQPYAE SSPSSDVETE LFIGLPRSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-79MIKC_MADS family protein