PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027339805.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

ARF

Protein Properties

Length: 1106aa MW: 122212 Da PI: 6.5885

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027339805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.9	1.7e-22	142	243	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ +++ + +l+ +d++++ W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_027339805.1 142 FCKQLTASDTSTHGGFSVPRRAAEKIfppldycVEPPVQ--ELVARDLHNNIWRFRHIYRGKPKRHLLTTGWSLFVSGKRLLAGDSVLFV--RDE 232 99**************************988555555..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_027339805.1 233 KQQLLLGIRRA 243 8889**997 PP
2	Auxin_resp	113.2	2.5e-37	268	351	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+v+YnPras+seFv++++k+ ka++ +s+GmRf+m feteds +rr++Gt+vgvsdld+vrW+nS W +L+ XP_027339805.1 268 AAHAVANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsYYISPGMRFRMTFETEDSGTRRYMGTIVGVSDLDSVRWKNSLWHNLQ 351 79*******************************97889***************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1106 aa Download sequence
MSTDSTAMNT QPDAAAPNLG EGGERRSINP ELWQACAGPL RNLPSPGTHV VYFPQGHSEQ 60 VAASLKQDVD AQIPNYPNLP SKLPCLLHNV TLHFFCLHSQ ADPETDEVYA QMTLQPVQSF 120 DADALLRSDL SLKSSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYCVEPPVQ 180 ELVARDLHNN IWRFRHIYRG KPKRHLLTTG WSLFVSGKRL LAGDSVLFVR DEKQQLLLGI 240 RRANRQPINI SSSVLSSDSM HIGILAAAAH AVANNSPFTV FYNPRASPSE FVIPLAKYYK 300 AVYSYYISPG MRFRMTFETE DSGTRRYMGT IVGVSDLDSV RWKNSLWHNL QVGWDDATAG 360 ERQSRVSIWE IEPVTAPYFI CPPPFFRPKR PRLPGMLDDE PSDFNNLFKS TMPWVGDDMC 420 INDSQALPGL SLVQWMSIQQ NPAPANSFQS NYVPSMAGLV LQNLPSADTS NQLGFSTSQI 480 SQSNNLSFDA QKILQTSQQH DHIQKLPSTS PPQQPRNLMS QTLPQSEVHT QLLNPQSLVQ 540 TNNILQQQQS SSQNHQLLRG LSQNPPQQHQ VTTMGQNQLQ NSIQSPMPDY VNHQLQMSDN 600 QVQLQLLQKL QQQQQTLLAK QSALQQPAQL IQIPDQQRKL LDVAHNSRAL TPGQVLEIPP 660 TLQNSLPEAR SLTPQITMPS SQKNVQLSNL SKQPGLLSEI SGHVGLPPTA TTNLHSASGC 720 SILTGAGQSV ITDDVPSCST SPSSNNFANA LPPVISSQIH RRTMVEDDMA LSAVTILSPS 780 VLETMSSNAN MVKDVHSKYE VKPSLNISKH QTQGNFAPKA YLNGGVQTDY LDSSSSATSV 840 FLFQSDTHMH QNNNPLSYNP QSMHCRDNTQ NLDVQADSRT NIPYGNHING QMEMSPNLDP 900 LLTKGTMGLG KDLPNTISSG GLLGDYENNK DAPELSSSMV SHAFGVLDMS FNSIDSTINS 960 SSFLNSGPRN PPSLPLPPPL LPPPSQQHQF QRKRTYTKVY KRGAVGRSVD ITRYSGYEEL 1020 KQDLALRFGI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ 1080 QMSLDGDFSN GGLPYPAGSS SDGGNT

Sequence ? help Back to Top

Protein Sequence Length: 1106 aa Download sequence

MSTDSTAMNT QPDAAAPNLG EGGERRSINP ELWQACAGPL RNLPSPGTHV VYFPQGHSEQ  60
VAASLKQDVD AQIPNYPNLP SKLPCLLHNV TLHFFCLHSQ ADPETDEVYA QMTLQPVQSF  120
DADALLRSDL SLKSSKPQPE FFCKQLTASD TSTHGGFSVP RRAAEKIFPP LDYCVEPPVQ  180
ELVARDLHNN IWRFRHIYRG KPKRHLLTTG WSLFVSGKRL LAGDSVLFVR DEKQQLLLGI  240
RRANRQPINI SSSVLSSDSM HIGILAAAAH AVANNSPFTV FYNPRASPSE FVIPLAKYYK  300
AVYSYYISPG MRFRMTFETE DSGTRRYMGT IVGVSDLDSV RWKNSLWHNL QVGWDDATAG  360
ERQSRVSIWE IEPVTAPYFI CPPPFFRPKR PRLPGMLDDE PSDFNNLFKS TMPWVGDDMC  420
INDSQALPGL SLVQWMSIQQ NPAPANSFQS NYVPSMAGLV LQNLPSADTS NQLGFSTSQI  480
SQSNNLSFDA QKILQTSQQH DHIQKLPSTS PPQQPRNLMS QTLPQSEVHT QLLNPQSLVQ  540
TNNILQQQQS SSQNHQLLRG LSQNPPQQHQ VTTMGQNQLQ NSIQSPMPDY VNHQLQMSDN  600
QVQLQLLQKL QQQQQTLLAK QSALQQPAQL IQIPDQQRKL LDVAHNSRAL TPGQVLEIPP  660
TLQNSLPEAR SLTPQITMPS SQKNVQLSNL SKQPGLLSEI SGHVGLPPTA TTNLHSASGC  720
SILTGAGQSV ITDDVPSCST SPSSNNFANA LPPVISSQIH RRTMVEDDMA LSAVTILSPS  780
VLETMSSNAN MVKDVHSKYE VKPSLNISKH QTQGNFAPKA YLNGGVQTDY LDSSSSATSV  840
FLFQSDTHMH QNNNPLSYNP QSMHCRDNTQ NLDVQADSRT NIPYGNHING QMEMSPNLDP  900
LLTKGTMGLG KDLPNTISSG GLLGDYENNK DAPELSSSMV SHAFGVLDMS FNSIDSTINS  960
SSFLNSGPRN PPSLPLPPPL LPPPSQQHQF QRKRTYTKVY KRGAVGRSVD ITRYSGYEEL  1020
KQDLALRFGI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP WEEFVNCVRC IKILSPQEVQ  1080
QMSLDGDFSN GGLPYPAGSS SDGGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein