PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340272.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 395aa MW: 44428.6 Da PI: 7.5619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340272.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	3e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_027340272.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	27.3	6.3e-09	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ XP_027340272.1 34 ICTFYQK-GVCAYGSRCRYDHV 54 7****.***********7 PP
3	zf-CCCH	18.2	4.4e-06	139	160	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg XP_027340272.1 139 SICS-FAAAGNCPRGEKCPHIHG 160 6788.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GVCAYGSRCR YDHVKAPRAQ 60 SSTPSSSVIE HQPLASDSAA FGNSRTTSNG FVTAADFSLS GSPYLLPHKP AWNQESEYHE 120 FLGEEDVGQS IITSPSEHSI CSFAAAGNCP RGEKCPHIHG DLCPTCGKHC LHPFRSEERE 180 EHMKSCENKQ KHLDALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCISCIRNW 240 RSSNPTLGMD VNSTLRACPI CRKLSYFVIP SVIWYSTTEE KLEIIDNYKA KLKSIDCKHF 300 DFGDGNCPFG TSCFYKHAYR DGRLEQVVLR HLGAADGNTV IAKDIRLLCP FSLFLFSGLV 360 LFNLSSLHLF FFWGFTNTIP DAIRLSDFLA NMHLR

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GVCAYGSRCR YDHVKAPRAQ  60
SSTPSSSVIE HQPLASDSAA FGNSRTTSNG FVTAADFSLS GSPYLLPHKP AWNQESEYHE  120
FLGEEDVGQS IITSPSEHSI CSFAAAGNCP RGEKCPHIHG DLCPTCGKHC LHPFRSEERE  180
EHMKSCENKQ KHLDALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCISCIRNW  240
RSSNPTLGMD VNSTLRACPI CRKLSYFVIP SVIWYSTTEE KLEIIDNYKA KLKSIDCKHF  300
DFGDGNCPFG TSCFYKHAYR DGRLEQVVLR HLGAADGNTV IAKDIRLLCP FSLFLFSGLV  360
LFNLSSLHLF FFWGFTNTIP DAIRLSDFLA NMHLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-160	C3H family protein