PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027340530.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27858.7 Da    PI: 8.8308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027340530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_027340530.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box95.86.7e-32931741697
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s+qqe+ kLk+++e Lqr+qR+l+GedL++Ls k+L++Le+qL++slk+iRs++++++l+q+++lq+ke+ l+e+n++Lr++
  XP_027340530.1  93 SSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKDLESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQR 174
                     689*****************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPEA NVSTREALVM EFSSQQEYLK LKARYEALQR SQRNLMGEDL  120
GPLSSKDLES LERQLDSSLK QIRSTRTQFM LDQLSDLQRK EHLLSEANRS LRQRQLEGYQ  180
INPLQLNPSV EDMGYGRHPA QTQGDALFQP LDCEPTLQIG YQPDPVSVVT AGPSMSNYMA  240
GWLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-131MIKC_MADS family protein