PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027341388.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 831aa MW: 93364.8 Da PI: 8.8319

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027341388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	143	163	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G++C+F H XP_027341388.1 143 PCRDFAA-GKCRRGSQCHFLHH 163 8****.***********6 PP
2	zf-CCCH	18.2	4.4e-06	202	223	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++Ck+ H XP_027341388.1 202 ETCINYAK-GRCRMGASCKYVHH 223 78****.***********6 PP
3	zf-CCCH	19.4	1.9e-06	267	287	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G rC+F+H+ XP_027341388.1 267 PCK-FFAFGNCRNGKRCRFSHD 287 799.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence
MSGNGRKHSS KWDSRDQGVA SSNSSKWSYL ERNDKLKSRM GFSFKEPFPE GRGSNKDDIT 60 SKDYRALDAT SAQDTDRSYS MEMSPGLEDW KSKKYSQSPR NGCSQSVRNA RSRSRSRSPS 120 RGFRWDSGVN DRCRMRAGGL AQPCRDFAAG KCRRGSQCHF LHHDDQNYDD NWESRHRKDG 180 TPRYSTLHES GDYSRTSGRS KETCINYAKG RCRMGASCKY VHHDNSDQFS KFSVDEATRE 240 REIDRRRTEN TLEQGGRHGP NHNGDIPCKF FAFGNCRNGK RCRFSHDRQA SRSPNRILND 300 DRSRSNQGED QALDRPKLSD KVSPNGRLRD DRWGLDGSMA DRDEVWDGSK QNDLVVVPDL 360 VKLVKDNKTG IMGTPEPGFM AWPIIDGWDH SLDKNRVHGG SPFSSDKKEE ANCWTAKNDS 420 ANIHSSQSVA ADIWPGNEKM SPDWNYGVGS SSHTKEEHGK SKQQVAPGQG FNQNVNTLHS 480 SSCHAVGQSQ VAVSIVPPRL GTVEVMQNQE VSTEKKYMVE PNIMDANLSQ VGSRNPPTQN 540 MVSKEQLTHL TSLSASLAHI LGTGRQLPQL YVTSISQDAK DTPFLSKTEG FGKPASITFI 600 KPDPAVELQK QCDPMCDSME PNKANVNGVP TTLSPSKKVP SLLPKVGQHF DDSKTAFSEE 660 QLVKSEHSIQ LQKVENIEVN KENNEVVAEE KQSSRIENKI TEENGPLENM DQNSGPDDEA 720 KKIKDVKGIR AFKFSLVEFV KELLKPTWKE GQITKEDYKA IVKKVTDKVT GTVQRVHIPQ 780 TQEKIDRYLS FSKPKLNKLI QVSGGSLTDF HLMYEGFQIL YLCKSNVSLF F

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence

MSGNGRKHSS KWDSRDQGVA SSNSSKWSYL ERNDKLKSRM GFSFKEPFPE GRGSNKDDIT  60
SKDYRALDAT SAQDTDRSYS MEMSPGLEDW KSKKYSQSPR NGCSQSVRNA RSRSRSRSPS  120
RGFRWDSGVN DRCRMRAGGL AQPCRDFAAG KCRRGSQCHF LHHDDQNYDD NWESRHRKDG  180
TPRYSTLHES GDYSRTSGRS KETCINYAKG RCRMGASCKY VHHDNSDQFS KFSVDEATRE  240
REIDRRRTEN TLEQGGRHGP NHNGDIPCKF FAFGNCRNGK RCRFSHDRQA SRSPNRILND  300
DRSRSNQGED QALDRPKLSD KVSPNGRLRD DRWGLDGSMA DRDEVWDGSK QNDLVVVPDL  360
VKLVKDNKTG IMGTPEPGFM AWPIIDGWDH SLDKNRVHGG SPFSSDKKEE ANCWTAKNDS  420
ANIHSSQSVA ADIWPGNEKM SPDWNYGVGS SSHTKEEHGK SKQQVAPGQG FNQNVNTLHS  480
SSCHAVGQSQ VAVSIVPPRL GTVEVMQNQE VSTEKKYMVE PNIMDANLSQ VGSRNPPTQN  540
MVSKEQLTHL TSLSASLAHI LGTGRQLPQL YVTSISQDAK DTPFLSKTEG FGKPASITFI  600
KPDPAVELQK QCDPMCDSME PNKANVNGVP TTLSPSKKVP SLLPKVGQHF DDSKTAFSEE  660
QLVKSEHSIQ LQKVENIEVN KENNEVVAEE KQSSRIENKI TEENGPLENM DQNSGPDDEA  720
KKIKDVKGIR AFKFSLVEFV KELLKPTWKE GQITKEDYKA IVKKVTDKVT GTVQRVHIPQ  780
TQEKIDRYLS FSKPKLNKLI QVSGGSLTDF HLMYEGFQIL YLCKSNVSLF F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-10	C3H family protein