PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027341393.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 771aa MW: 86530.2 Da PI: 8.6414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027341393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	104	124	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G++C+F H XP_027341393.1 104 PCRDFAA-GKCRRGSQCHFLHH 124 8****.***********6 PP
2	zf-CCCH	18.3	4.1e-06	163	184	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++Ck+ H XP_027341393.1 163 ETCINYAK-GRCRMGASCKYVHH 184 78****.***********6 PP
3	zf-CCCH	19.5	1.8e-06	228	248	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G rC+F+H+ XP_027341393.1 228 PCK-FFAFGNCRNGKRCRFSHD 248 799.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence
MGFSFKEPFP EGRGSNKDDI TSKDYRALDA TSAQDTDRSY SMEMSPGLED WKSKKYSQSP 60 RNGCSQSVRN ARSRSRSRSP SRGFRWDSGV NDRCRMRAGG LAQPCRDFAA GKCRRGSQCH 120 FLHHDDQNYD DNWESRHRKD GTPRYSTLHE SGDYSRTSGR SKETCINYAK GRCRMGASCK 180 YVHHDNSDQF SKFSVDEATR EREIDRRRTE NTLEQGGRHG PNHNGDIPCK FFAFGNCRNG 240 KRCRFSHDRQ ASRSPNRILN DDRSRSNQGE DQALDRPKLS DKVSPNGRLR DDRWGLDGSM 300 ADRDEVWDGS KQNDLVVVPD LVKLVKDNKT GIMGTPEPGF MAWPIIDGWD HSLDKNRVHG 360 GSPFSSDKKE EANCWTAKND SANIHSSQSV AADIWPGNEK MSPDWNYGVG SSSHTKEEHG 420 KSKQQVAPGQ GFNQNVNTLH SSSCHAVGQS QVAVSIVPPR LGTVEVMQNQ EVSTEKKYMV 480 EPNIMDANLS QVGSRNPPTQ NMVSKEQLTH LTSLSASLAH ILGTGRQLPQ LYVTSISQDA 540 KDTPFLSKTE GFGKPASITF IKPDPAVELQ KQCDPMCDSM EPNKANVNGV PTTLSPSKKV 600 PSLLPKVGQH FDDSKTAFSE EQLVKSEHSI QLQKVENIEV NKENNEVVAE EKQSSRIENK 660 ITEENGPLEN MDQNSGPDDE AKKIKDVKGI RAFKFSLVEF VKELLKPTWK EGQITKEDYK 720 AIVKKVTDKV TGTVQRVHIP QTQEKIDRYL SFSKPKLNKL IQAYVEKVQK A

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence

MGFSFKEPFP EGRGSNKDDI TSKDYRALDA TSAQDTDRSY SMEMSPGLED WKSKKYSQSP  60
RNGCSQSVRN ARSRSRSRSP SRGFRWDSGV NDRCRMRAGG LAQPCRDFAA GKCRRGSQCH  120
FLHHDDQNYD DNWESRHRKD GTPRYSTLHE SGDYSRTSGR SKETCINYAK GRCRMGASCK  180
YVHHDNSDQF SKFSVDEATR EREIDRRRTE NTLEQGGRHG PNHNGDIPCK FFAFGNCRNG  240
KRCRFSHDRQ ASRSPNRILN DDRSRSNQGE DQALDRPKLS DKVSPNGRLR DDRWGLDGSM  300
ADRDEVWDGS KQNDLVVVPD LVKLVKDNKT GIMGTPEPGF MAWPIIDGWD HSLDKNRVHG  360
GSPFSSDKKE EANCWTAKND SANIHSSQSV AADIWPGNEK MSPDWNYGVG SSSHTKEEHG  420
KSKQQVAPGQ GFNQNVNTLH SSSCHAVGQS QVAVSIVPPR LGTVEVMQNQ EVSTEKKYMV  480
EPNIMDANLS QVGSRNPPTQ NMVSKEQLTH LTSLSASLAH ILGTGRQLPQ LYVTSISQDA  540
KDTPFLSKTE GFGKPASITF IKPDPAVELQ KQCDPMCDSM EPNKANVNGV PTTLSPSKKV  600
PSLLPKVGQH FDDSKTAFSE EQLVKSEHSI QLQKVENIEV NKENNEVVAE EKQSSRIENK  660
ITEENGPLEN MDQNSGPDDE AKKIKDVKGI RAFKFSLVEF VKELLKPTWK EGQITKEDYK  720
AIVKKVTDKV TGTVQRVHIP QTQEKIDRYL SFSKPKLNKL IQAYVEKVQK A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-13	C3H family protein