PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027345363.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

LSD

Protein Properties

Length: 176aa MW: 18717.7 Da PI: 8.5481

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027345363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43	7.5e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++V+CalC+t+ XP_027345363.1 7 CNGCRSLLLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	49.7	6.1e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV XP_027345363.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.5	2.9e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ XP_027345363.1 84 CGNCRTTLMYPYGAPSVKCAVCHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MQSQLVCNGC RSLLLYPRGA TNVCCALCNT ITSVPPPGME MSQLYCGGCR TLLMYTRGAT 60 SVRCSCCHTV NLVPAPNQVA HVHCGNCRTT LMYPYGAPSV KCAVCHYITN ITMNNGRLPI 120 PVHRPNGTTN TGTVPSTSTS MTQSQSQTVV VENPMSVDSS GKLVSNVVVG VTTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-68	LSD family protein