PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027346879.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 886aa MW: 96685.8 Da PI: 5.2798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027346879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	72	99	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r G C++Gd C++aHg+ XP_027346879.1 72 WKTSLCSYFRRHGgSCSHGDACRYAHGE 99 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence
MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA 60 DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA 120 LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN 180 KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN 240 SNVTLHQELD KENPMVDVPS SETLDAETND DNLAFDGSVS KTRNVRDVVT PLAHMAYADQ 300 LEQKKNSLVK ILKKLTKNAR KACPTGVPLP EWVLKSREIG GLPCKLEGIV ASPIVNGYRN 360 KCEFSVGYSL EGKVTVGFML GNFREGVTAV EEAVDCPNVS TIAGKYANIF QEFLQHSDLP 420 VWNRFKNTGF WRQLTVREGR TNGSVVDAGT FDGIAEVMLI VQAFVAGATS HCPTLPLTAL 480 IVQDHQGISN VAPADAPMHP LPLPKTVGDP EMGENNNATD VRIHDYISNL QFSISPTAFF 540 QVNTLAAEKL YSLAGDWACL GPDTLLFDIC CGTGTIGLTL AHRVGMVIGI EMNASAVTDA 600 HRNAEINGIK NVKFICAKAE DVMGSLLREY LDVTKEQVGH PNISGNGNDI PVDTACPEPE 660 NGEMASCCSD NNDAEVRNVV QKASTSEQVD GISKQAEDAM GAVLGENLNV PEEQVDDPNI 720 SKSGKDIPED SANAEPENGE MASRCSENNS AEAGSVVQQD SASENGNTSS EQFKNVVAIV 780 DPPRAGLHPT VIKALRTHPR LRRLVYISCN PESLVANAIE LCTPSPIKVE KGNKDNRGWR 840 NRSSAGLARH RAKSMPISEA FQPIKAIPVD LFPHTQHCEL VMLLER

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence

MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA  60
DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA  120
LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN  180
KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN  240
SNVTLHQELD KENPMVDVPS SETLDAETND DNLAFDGSVS KTRNVRDVVT PLAHMAYADQ  300
LEQKKNSLVK ILKKLTKNAR KACPTGVPLP EWVLKSREIG GLPCKLEGIV ASPIVNGYRN  360
KCEFSVGYSL EGKVTVGFML GNFREGVTAV EEAVDCPNVS TIAGKYANIF QEFLQHSDLP  420
VWNRFKNTGF WRQLTVREGR TNGSVVDAGT FDGIAEVMLI VQAFVAGATS HCPTLPLTAL  480
IVQDHQGISN VAPADAPMHP LPLPKTVGDP EMGENNNATD VRIHDYISNL QFSISPTAFF  540
QVNTLAAEKL YSLAGDWACL GPDTLLFDIC CGTGTIGLTL AHRVGMVIGI EMNASAVTDA  600
HRNAEINGIK NVKFICAKAE DVMGSLLREY LDVTKEQVGH PNISGNGNDI PVDTACPEPE  660
NGEMASCCSD NNDAEVRNVV QKASTSEQVD GISKQAEDAM GAVLGENLNV PEEQVDDPNI  720
SKSGKDIPED SANAEPENGE MASRCSENNS AEAGSVVQQD SASENGNTSS EQFKNVVAIV  780
DPPRAGLHPT VIKALRTHPR LRRLVYISCN PESLVANAIE LCTPSPIKVE KGNKDNRGWR  840
NRSSAGLARH RAKSMPISEA FQPIKAIPVD LFPHTQHCEL VMLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein