PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027346880.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 885aa MW: 96397.4 Da PI: 5.2301

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027346880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	72	99	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r G C++Gd C++aHg+ XP_027346880.1 72 WKTSLCSYFRRHGgSCSHGDACRYAHGE 99 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence
MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA 60 DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA 120 LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN 180 KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN 240 SNVTLHQELD KENPMVDVPS SETLDAETND DNLAFDGSVS KTRNVRDVVT PLAHMAYADQ 300 LEQKKNSLVK ILKKLTKNAR KACPTGVPLP EWVLKSREIG GLPCKLEGIV ASPIVNGYRN 360 KCEFSVGYSL EGKVTVGFML GNFREGVTAV EEAVDCPNVS TIAGKYANIF QEFLQHSDLP 420 VWNRFKNTGF WRQLTVREGR TNGSVVDAGT FDGIAEVMLI VQVSTANFDV AQVATEFKRL 480 AQAFVAGATS HCPTLPLTAL IVQDHQGISN VAPADAPMHP LPLPKTVGDP EMGENNNATD 540 VNTLAAEKLY SLAGDWACLG PDTLLFDICC GTGTIGLTLA HRVGMVIGIE MNASAVTDAH 600 RNAEINGIKN VKFICAKAED VMGSLLREYL DVTKEQVGHP NISGNGNDIP VDTACPEPEN 660 GEMASCCSDN NDAEVRNVVQ KASTSEQVDG ISKQAEDAMG AVLGENLNVP EEQVDDPNIS 720 KSGKDIPEDS ANAEPENGEM ASRCSENNSA EAGSVVQQDS ASENGNTSSE QFKNVVAIVD 780 PPRAGLHPTV IKALRTHPRL RRLVYISCNP ESLVANAIEL CTPSPIKVEK GNKDNRGWRN 840 RSSAGLARHR AKSMPISEAF QPIKAIPVDL FPHTQHCELV MLLER

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence

MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA  60
DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA  120
LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN  180
KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN  240
SNVTLHQELD KENPMVDVPS SETLDAETND DNLAFDGSVS KTRNVRDVVT PLAHMAYADQ  300
LEQKKNSLVK ILKKLTKNAR KACPTGVPLP EWVLKSREIG GLPCKLEGIV ASPIVNGYRN  360
KCEFSVGYSL EGKVTVGFML GNFREGVTAV EEAVDCPNVS TIAGKYANIF QEFLQHSDLP  420
VWNRFKNTGF WRQLTVREGR TNGSVVDAGT FDGIAEVMLI VQVSTANFDV AQVATEFKRL  480
AQAFVAGATS HCPTLPLTAL IVQDHQGISN VAPADAPMHP LPLPKTVGDP EMGENNNATD  540
VNTLAAEKLY SLAGDWACLG PDTLLFDICC GTGTIGLTLA HRVGMVIGIE MNASAVTDAH  600
RNAEINGIKN VKFICAKAED VMGSLLREYL DVTKEQVGHP NISGNGNDIP VDTACPEPEN  660
GEMASCCSDN NDAEVRNVVQ KASTSEQVDG ISKQAEDAMG AVLGENLNVP EEQVDDPNIS  720
KSGKDIPEDS ANAEPENGEM ASRCSENNSA EAGSVVQQDS ASENGNTSSE QFKNVVAIVD  780
PPRAGLHPTV IKALRTHPRL RRLVYISCNP ESLVANAIEL CTPSPIKVEK GNKDNRGWRN  840
RSSAGLARHR AKSMPISEAF QPIKAIPVDL FPHTQHCELV MLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein