PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027347143.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 371aa MW: 39453.3 Da PI: 7.2239

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027347143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_027347143.1 88 FKTKLCCKFRA-GTCPYITNCNFAHS 112 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	163	188	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_027347143.1 163 YKGRHCKKFYTEEGCPYGDSCTFLHD 188 78888********************7 PP
3	zf-CCCH	42.8	8.4e-14	250	275	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_027347143.1 250 WKTRICNKWEMTGYCPFGNKCHFAHG 275 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MDYARDGNVV QIITGGGGSG ESWSGDQADW ATEDEYRFWN NNGDAETTPS NSNYESRRSG 60 SEPPGKKSRN SQDGGGSSRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP 120 PNWQEIVAAH EEEKMVMTEP REEFQIPTVG SSSFAGDMMQ RSYKGRHCKK FYTEEGCPYG 180 DSCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGVGGGGG SGGGGGGGGG SGAASGGSAG 240 NGPNSKPSNW KTRICNKWEM TGYCPFGNKC HFAHGATELH RYGGGLMEGE NRDAASAVAP 300 DTNKGVPSKA CPDNVVASVT PVAHSDVYHI GVVPSQRPSI VIQRPGQRTH QKWKGPDKIS 360 RIYGDWIDDI E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MDYARDGNVV QIITGGGGSG ESWSGDQADW ATEDEYRFWN NNGDAETTPS NSNYESRRSG  60
SEPPGKKSRN SQDGGGSSRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP  120
PNWQEIVAAH EEEKMVMTEP REEFQIPTVG SSSFAGDMMQ RSYKGRHCKK FYTEEGCPYG  180
DSCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGVGGGGG SGGGGGGGGG SGAASGGSAG  240
NGPNSKPSNW KTRICNKWEM TGYCPFGNKC HFAHGATELH RYGGGLMEGE NRDAASAVAP  300
DTNKGVPSKA CPDNVVASVT PVAHSDVYHI GVVPSQRPSI VIQRPGQRTH QKWKGPDKIS  360
RIYGDWIDDI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-120	C3H family protein