PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027347488.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family LSD
Protein Properties Length: 126aa    MW: 13810.8 Da    PI: 8.726
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027347488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.72.5e-153862125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lLsYPrGA++V+C++C+tV
  XP_027347488.1 38 CGSCRRLLSYPRGAKHVKCSCCQTV 62
                    ************************9 PP
2zf-LSD140.73.9e-1376100125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+G++ VRC++C +V
  XP_027347488.1  76 CGSCAVLLMYPYGSSQVRCSSCRFV 100
                     **********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    
MQNQQLHKED DDDGPPPGWQ PIPTPPPPRP SGSAQMICGS CRRLLSYPRG AKHVKCSCCQ  60
TVNIVFEADQ VGQVKCGSCA VLLMYPYGSS QVRCSSCRFV TEIGAHNRRP PWSVQQRKPT  120
PSKAGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-42LSD family protein