PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027350856.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 292aa MW: 30877.2 Da PI: 9.5952

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027350856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_027350856.1 101 KTRLCNKFNTAEGCKFGDKCHFAHGE 126 8***********************96 PP
2	zf-CCCH	37.4	4.3e-12	262	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +G+rC+FaHg XP_027350856.1 262 YKTKLCENFAK-GSCTFGERCHFAHG 286 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MDIRKRGRPE HSFNINGGLK KSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHF 60 VPGGYNAVAQ MMNLTPAAPP ASRNVAAPPP VPNGSTPPAV KTRLCNKFNT AEGCKFGDKC 120 HFAHGEWELG KHIAPSFDDH RAMGPPAAGR IGGRMEPPPG PASSFGANAT AKISVEASLA 180 GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ 240 MSALPKTTAG VPGAPAPHGS NYKTKLCENF AKGSCTFGER CHFAHGAAEL RK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	5e-95	C3H family protein