PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027350859.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 222aa MW: 23303.6 Da PI: 9.1663

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027350859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.5e-10	31	56	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_027350859.1 31 KTRLCNKFNTAEGCKFGDKCHFAHGE 56 8***********************96 PP
2	zf-CCCH	37.9	3e-12	192	216	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +G+rC+FaHg XP_027350859.1 192 YKTKLCENFAK-GSCTFGERCHFAHG 216 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MMNLTPAAPP ASRNVAAPPP VPNGSTPPAV KTRLCNKFNT AEGCKFGDKC HFAHGEWELG 60 KHIAPSFDDH RAMGPPAAGR IGGRMEPPPG PASSFGANAT AKISVEASLA GAIIGKGGVN 120 SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSALPKTTAG 180 VPGAPAPHGS NYKTKLCENF AKGSCTFGER CHFAHGAAEL RK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	9e-67	C3H family protein