PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027354793.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 488aa MW: 53558.4 Da PI: 7.7583

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027354793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	6.9e-11	126	150	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_027354793.1 126 GEKDCAHYMLTRTCKFGDSCKFDHP 150 7889********************8 PP
2	zf-CCCH	33.9	5.3e-11	179	203	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_027354793.1 179 EPDCPYFLKTQRCKFGSKCKFNHPK 203 789********************96 PP
3	zf-CCCH	38.7	1.6e-12	220	244	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G+ CkF+H++ XP_027354793.1 220 EPPCAFYMKTGKCKFGAACKFHHPK 244 79*********************96 PP
4	zf-CCCH	40.7	4e-13	297	320	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_027354793.1 297 EVDCPFYMKTGSCKYGASCRYNHP 320 689********************9 PP
5	zf-CCCH	39.4	9.8e-13	383	406	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+G+rCk++H+ XP_027354793.1 383 QIECDYYMKTGECKFGERCKYHHP 406 568********************8 PP
6	zf-CCCH	40.7	4e-13	434	457	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCk+G++CkF H+p XP_027354793.1 434 VICPYYLKTGTCKFGATCKFDHPP 457 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA 60 PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAW YSTNSLAKRP RYESASTMPI 120 YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP IWVPEGGIPD WKEVPNIVAS EAPPERAGEP 180 DCPYFLKTQR CKFGSKCKFN HPKVSSENAD VLGLPERPSE PPCAFYMKTG KCKFGAACKF 240 HHPKDIQIQL SDDMSHTVEQ TQTNSMMGGA MGDTKPNKSL ISPLLHNSKG LPVRLGEVDC 300 PFYMKTGSCK YGASCRYNHP DRNAINPPIA AFGASVLPSS AANLNIGVLN PAVSVYQAFD 360 PRLSNPMSQV GIAETIYPQR PGQIECDYYM KTGECKFGER CKYHHPIDRS APSLSKQATV 420 KLTPAGLPRR EGAVICPYYL KTGTCKFGAT CKFDHPPPGE VMEIAKSQGT SNGGEAKDHE 480 EETPSEEN

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA  60
PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAW YSTNSLAKRP RYESASTMPI  120
YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP IWVPEGGIPD WKEVPNIVAS EAPPERAGEP  180
DCPYFLKTQR CKFGSKCKFN HPKVSSENAD VLGLPERPSE PPCAFYMKTG KCKFGAACKF  240
HHPKDIQIQL SDDMSHTVEQ TQTNSMMGGA MGDTKPNKSL ISPLLHNSKG LPVRLGEVDC  300
PFYMKTGSCK YGASCRYNHP DRNAINPPIA AFGASVLPSS AANLNIGVLN PAVSVYQAFD  360
PRLSNPMSQV GIAETIYPQR PGQIECDYYM KTGECKFGER CKYHHPIDRS APSLSKQATV  420
KLTPAGLPRR EGAVICPYYL KTGTCKFGAT CKFDHPPPGE VMEIAKSQGT SNGGEAKDHE  480
EETPSEEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-177	C3H family protein