PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027354794.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 486aa MW: 53562.4 Da PI: 7.6388

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027354794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	6.9e-11	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_027354794.1 141 GEKDCAHYMLTRTCKFGDSCKFDHP 165 7889********************8 PP
2	zf-CCCH	33.9	5.3e-11	194	218	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_027354794.1 194 EPDCPYFLKTQRCKFGSKCKFNHPK 218 789********************96 PP
3	zf-CCCH	38.7	1.6e-12	235	259	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G+ CkF+H++ XP_027354794.1 235 EPPCAFYMKTGKCKFGAACKFHHPK 259 79*********************96 PP
4	zf-CCCH	40.7	4e-13	312	335	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_027354794.1 312 EVDCPFYMKTGSCKYGASCRYNHP 335 689********************9 PP
5	zf-CCCH	39.4	9.7e-13	381	404	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+G+rCk++H+ XP_027354794.1 381 QIECDYYMKTGECKFGERCKYHHP 404 568********************8 PP
6	zf-CCCH	40.7	4e-13	432	455	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCk+G++CkF H+p XP_027354794.1 432 VICPYYLKTGTCKFGATCKFDHPP 455 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA 60 PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAL YHPSILSTIG QSEAWYSTNS 120 LAKRPRYESA STMPIYPQRP GEKDCAHYML TRTCKFGDSC KFDHPIWVPE GGIPDWKEVP 180 NIVASEAPPE RAGEPDCPYF LKTQRCKFGS KCKFNHPKVS SENADVLGLP ERPSEPPCAF 240 YMKTGKCKFG AACKFHHPKD IQIQLSDDMS HTVEQTQTNS MMGGAMGDTK PNKSLISPLL 300 HNSKGLPVRL GEVDCPFYMK TGSCKYGASC RYNHPDRNAA NLNIGVLNPA VSVYQAFDPR 360 LSNPMSQVGI AETIYPQRPG QIECDYYMKT GECKFGERCK YHHPIDRSAP SLSKQATVKL 420 TPAGLPRREG AVICPYYLKT GTCKFGATCK FDHPPPGEVM EIAKSQGTSN GGEAKDHEEE 480 TPSEEN

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA  60
PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAL YHPSILSTIG QSEAWYSTNS  120
LAKRPRYESA STMPIYPQRP GEKDCAHYML TRTCKFGDSC KFDHPIWVPE GGIPDWKEVP  180
NIVASEAPPE RAGEPDCPYF LKTQRCKFGS KCKFNHPKVS SENADVLGLP ERPSEPPCAF  240
YMKTGKCKFG AACKFHHPKD IQIQLSDDMS HTVEQTQTNS MMGGAMGDTK PNKSLISPLL  300
HNSKGLPVRL GEVDCPFYMK TGSCKYGASC RYNHPDRNAA NLNIGVLNPA VSVYQAFDPR  360
LSNPMSQVGI AETIYPQRPG QIECDYYMKT GECKFGERCK YHHPIDRSAP SLSKQATVKL  420
TPAGLPRREG AVICPYYLKT GTCKFGATCK FDHPPPGEVM EIAKSQGTSN GGEAKDHEEE  480
TPSEEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-180	C3H family protein