PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027354795.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 483aa MW: 53125.9 Da PI: 8.0133

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027354795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.8e-11	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_027354795.1 141 GEKDCAHYMLTRTCKFGDSCKFDHP 165 7889********************8 PP
2	zf-CCCH	26.8	9.3e-09	179	198	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++t Ck+G++CkF+H++ XP_027354795.1 179 YFLKTQRCKFGSKCKFNHPK 198 8*****************96 PP
3	zf-CCCH	38.7	1.6e-12	215	239	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G+ CkF+H++ XP_027354795.1 215 EPPCAFYMKTGKCKFGAACKFHHPK 239 79*********************96 PP
4	zf-CCCH	40.7	3.9e-13	292	315	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_027354795.1 292 EVDCPFYMKTGSCKYGASCRYNHP 315 689********************9 PP
5	zf-CCCH	39.5	9.6e-13	378	401	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+G+rCk++H+ XP_027354795.1 378 QIECDYYMKTGECKFGERCKYHHP 401 568********************8 PP
6	zf-CCCH	40.7	4e-13	429	452	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCk+G++CkF H+p XP_027354795.1 429 VICPYYLKTGTCKFGATCKFDHPP 452 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA 60 PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAL YHPSILSTIG QSEAWYSTNS 120 LAKRPRYESA STMPIYPQRP GEKDCAHYML TRTCKFGDSC KFDHPIWVPE GGIPDWKEYF 180 LKTQRCKFGS KCKFNHPKVS SENADVLGLP ERPSEPPCAF YMKTGKCKFG AACKFHHPKD 240 IQIQLSDDMS HTVEQTQTNS MMGGAMGDTK PNKSLISPLL HNSKGLPVRL GEVDCPFYMK 300 TGSCKYGASC RYNHPDRNAI NPPIAAFGAS VLPSSAANLN IGVLNPAVSV YQAFDPRLSN 360 PMSQVGIAET IYPQRPGQIE CDYYMKTGEC KFGERCKYHH PIDRSAPSLS KQATVKLTPA 420 GLPRREGAVI CPYYLKTGTC KFGATCKFDH PPPGEVMEIA KSQGTSNGGE AKDHEEETPS 480 EEN

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MENHIYASYS PTTNYRFFDP DTTATTATMF LSHHHHHHRT DPASATSLRF PSSSADIDIA  60
PPGVTSRIAS STATNLLSPW PPSANVAPSS LDLKRSSEAL YHPSILSTIG QSEAWYSTNS  120
LAKRPRYESA STMPIYPQRP GEKDCAHYML TRTCKFGDSC KFDHPIWVPE GGIPDWKEYF  180
LKTQRCKFGS KCKFNHPKVS SENADVLGLP ERPSEPPCAF YMKTGKCKFG AACKFHHPKD  240
IQIQLSDDMS HTVEQTQTNS MMGGAMGDTK PNKSLISPLL HNSKGLPVRL GEVDCPFYMK  300
TGSCKYGASC RYNHPDRNAI NPPIAAFGAS VLPSSAANLN IGVLNPAVSV YQAFDPRLSN  360
PMSQVGIAET IYPQRPGQIE CDYYMKTGEC KFGERCKYHH PIDRSAPSLS KQATVKLTPA  420
GLPRREGAVI CPYYLKTGTC KFGATCKFDH PPPGEVMEIA KSQGTSNGGE AKDHEEETPS  480
EEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-174	C3H family protein