PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027357555.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25774.7 Da    PI: 10.1665
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027357555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.8e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+ rqvtfskRr g+ KKA+E+SvLCda+va+i+f  +g+l+eyss
  XP_027357555.1  9 KQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGRLFEYSS 59
                    78***********************************************96 PP
2K-box89.37.4e-30961888100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + ++ + +++ +  kL  ++e L++++R+++G+dL+ Ls++eLq+Le+qL+++lk+iR++Kn+++ e+i+elqkk kel+e+n  L+kk++e
  XP_027357555.1  96 GAGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDHLSMRELQSLEHQLDTALKRIRTRKNQIMNESISELQKKAKELKEHNSILEKKIKE 188
                     566788899*********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGRGRVQLKQ IENKISRQVT FSKRRMGLRK KAHEISVLCD AQVALIVFNA KGRLFEYSSE  60
SRAPHLQSWE NALSAKSMEN VLERYERHAH SVQLVGAGDE SQGNWSLQCF KLTGKVEVLE  120
KNLRNFVGQD LDHLSMRELQ SLEHQLDTAL KRIRTRKNQI MNESISELQK KAKELKEHNS  180
ILEKKIKEQE KTMAEPTHCG PEILGQTCLP VLQPQKRLIP SLTLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-76MIKC_MADS family protein