PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027358160.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 423aa MW: 46060 Da PI: 7.7393

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027358160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	100	120	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ + G C++G+rCkF H+ XP_027358160.1 100 VCNYWIQ-GNCSFGERCKFLHS 120 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MDVDGGNKRV YNRLGADAKH QKVCFHWQAG KCNRYPCPYL HSELPSSHAN GTSSKRPYEN 60 SGFSGPRRSP NFNTWGRGGG RGGGGGAGGG RGVVVKADKV CNYWIQGNCS FGERCKFLHS 120 WSVGDGFSLL TQLEGHQKVV SGIAFPSGSD KLYTGSTDET VRLWDCQSGK CMAVVTLGGE 180 VGCMISEGPW VFVGIPNFVK AWNTQNSMEL SLNGPVGQVY ALVVINDMLF AGTQDGSILA 240 WKFNVVTNCF EPAASLKGHS RGVVSLVVGA NRLYSGSMDN TIRVWNLETL QCLQTLTDHT 300 SVVMSVLCWD QFLLSCSLDK TVKVWYATES GNLEVTYTHN EENGIVTLCG MHDSQGKPIL 360 LCSCNDNTVR LYDLPTFAER GKIFTKQEVR AIQTGPNGIF FTGDGTGQVR VWNWIAEPTT 420 TGQ

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MDVDGGNKRV YNRLGADAKH QKVCFHWQAG KCNRYPCPYL HSELPSSHAN GTSSKRPYEN  60
SGFSGPRRSP NFNTWGRGGG RGGGGGAGGG RGVVVKADKV CNYWIQGNCS FGERCKFLHS  120
WSVGDGFSLL TQLEGHQKVV SGIAFPSGSD KLYTGSTDET VRLWDCQSGK CMAVVTLGGE  180
VGCMISEGPW VFVGIPNFVK AWNTQNSMEL SLNGPVGQVY ALVVINDMLF AGTQDGSILA  240
WKFNVVTNCF EPAASLKGHS RGVVSLVVGA NRLYSGSMDN TIRVWNLETL QCLQTLTDHT  300
SVVMSVLCWD QFLLSCSLDK TVKVWYATES GNLEVTYTHN EENGIVTLCG MHDSQGKPIL  360
LCSCNDNTVR LYDLPTFAER GKIFTKQEVR AIQTGPNGIF FTGDGTGQVR VWNWIAEPTT  420
TGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	GGGRGGGGG
2	79	87	GGGRGGGGG
3	81	91	RGGGGGAGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	0.0	C3H family protein