PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027358163.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family C3H
Protein Properties Length: 391aa    MW: 42673.3 Da    PI: 7.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027358163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.5e-09100120526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ + G C++G+rCkF H+
  XP_027358163.1 100 VCNYWIQ-GNCSFGERCKFLHS 120
                     6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MDVDGGNKRV YNRLGADAKH QKVCFHWQAG KCNRYPCPYL HSELPSSHAN GTSSKRPYEN  60
SGFSGPRRSP NFNTWGRGGG RGGGGGAGGG RGVVVKADKV CNYWIQGNCS FGERCKFLHS  120
WSVGDGFSLL TQLEGHQKCM AVVTLGGEVG CMISEGPWVF VGIPNFVKAW NTQNSMELSL  180
NGPVGQVYAL VVINDMLFAG TQDGSILAWK FNVVTNCFEP AASLKGHSRG VVSLVVGANR  240
LYSGSMDNTI RVWNLETLQC LQTLTDHTSV VMSVLCWDQF LLSCSLDKTV KVWYATESGN  300
LEVTYTHNEE NGIVTLCGMH DSQGKPILLC SCNDNTVRLY DLPTFAERGK IFTKQEVRAI  360
QTGPNGIFFT GDGTGQVRVW NWIAEPTTTG Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886GGGRGGGGG
27987GGGRGGGGG
38191RGGGGGAGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein