PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027358413.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

Trihelix

Protein Properties

Length: 565aa MW: 64104.8 Da PI: 5.8846

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027358413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.8	1.2e-12	15	64	36	87
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k++e g++r++k+Ckek+en+ k++k++keg++++++++ t+++fdqlea XP_027358413.1 15 WKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGK--TYRFFDQLEA 64 57899***************************975544..6*****85 PP
2	trihelix	101.2	8.2e-32	383	467	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev++Li++r+++e++++++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ le XP_027358413.1 383 RWPKVEVQELINLRTSLETKYQESGPKGPLWEEISTLMKKMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLE 467 8*******************************************************************8.99*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MRFQWERLFP FNNSWKLAEL GYHRNAKKCK EKFENVYKYH KRTKEGRSGK SEGKTYRFFD 60 QLEALENNPA IQSPTPTSKP PLQTIALPAT PVSIVASSAS SLPLPTTTVP LQPVANNTTT 120 IASTTTLPMA VSQGILNIIP STINITTPSY PSSNPTYFTT PTPNPTSKNP PNTINPSSFP 180 NIPTDLLSNS SSSSTSSEET LEGGGTRRKR KRKWKDFFER LMKEVIEKQE ELQRRFLEAI 240 EKREHERVAR EEAWRMQEMQ RINREREILA HERSIAAAKD AAVMAFLQKI AEQQQQQINL 300 EPALNNNNNI NIVPPVQQAT TAPTTVQQTQ TTAIPEAPPA QSLAPQQQHH QVHQQQQQVV 360 TNVEIVKADN NGENLMMGTS SSRWPKVEVQ ELINLRTSLE TKYQESGPKG PLWEEISTLM 420 KKMGYNRSAK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHLLEALY REKNKGEGQM 480 KPESMMAPLM VPPEQQWPPQ HAAVPEVTME DAQNDPMDLQ HHNEEDEDEE MDKEIGDDDE 540 DEDDDGGDNY EIVASKPASA DASAE

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MRFQWERLFP FNNSWKLAEL GYHRNAKKCK EKFENVYKYH KRTKEGRSGK SEGKTYRFFD  60
QLEALENNPA IQSPTPTSKP PLQTIALPAT PVSIVASSAS SLPLPTTTVP LQPVANNTTT  120
IASTTTLPMA VSQGILNIIP STINITTPSY PSSNPTYFTT PTPNPTSKNP PNTINPSSFP  180
NIPTDLLSNS SSSSTSSEET LEGGGTRRKR KRKWKDFFER LMKEVIEKQE ELQRRFLEAI  240
EKREHERVAR EEAWRMQEMQ RINREREILA HERSIAAAKD AAVMAFLQKI AEQQQQQINL  300
EPALNNNNNI NIVPPVQQAT TAPTTVQQTQ TTAIPEAPPA QSLAPQQQHH QVHQQQQQVV  360
TNVEIVKADN NGENLMMGTS SSRWPKVEVQ ELINLRTSLE TKYQESGPKG PLWEEISTLM  420
KKMGYNRSAK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHLLEALY REKNKGEGQM  480
KPESMMAPLM VPPEQQWPPQ HAAVPEVTME DAQNDPMDLQ HHNEEDEDEE MDKEIGDDDE  540
DEDDDGGDNY EIVASKPASA DASAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	RRKRKR
2	207	213	RRKRKRK
3	208	213	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-55	Trihelix family protein