PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027361298.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

LSD

Protein Properties

Length: 147aa MW: 15413 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027361298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.3	5.3e-13	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+ L YP GA+sV+Ca+C++V XP_027361298.1 30 CSGCRNFLLYPVGATSVCCAVCNAV 54 ************************9 PP
2	zf-LSD1	44.8	2.1e-14	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t L+Y rGA+sV+C++C+tV XP_027361298.1 69 CGGCHTFLMYIRGATSVQCSCCHTV 93 ************************9 PP
3	zf-LSD1	38.4	2.1e-12	107	131	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V XP_027361298.1 107 CGNCRMLLMYQYGARSVKCAVCSFV 131 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
MPVPLAPYPT PPPLPLYTPP PNGAQSQLVC SGCRNFLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLVCG GCHTFLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCSF VTSVGASTST TEQKFST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-67	LSD family protein