PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027361829.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 492aa MW: 53698 Da PI: 4.8253

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027361829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.8	2.4e-10	153	175	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G +CkF+H+ XP_027361829.1 153 EDCAFYLKTGTCKFGFNCKFNHP 175 89********************9 PP
2	zf-CCCH	29.1	1.7e-09	199	221	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C++++r+G Ck+G CkF+H XP_027361829.1 199 QTECKYYLRSGGCKFGKACKFNH 221 679******************** PP
3	zf-CCCH	38	2.7e-12	245	268	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C +++rtG Ck+G++CkF+H+ XP_027361829.1 245 EKECVYYMRTGSCKFGANCKFNHP 268 679********************9 PP
4	zf-CCCH	29.3	1.4e-09	379	405	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ XP_027361829.1 379 PGEPECSYFLKTGDCKFKSNCKFHHPK 405 5799*********************96 PP
5	zf-CCCH	34.1	4.6e-11	427	450	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ CkF H+ XP_027361829.1 427 QNVCTHYSRYGICKFGPACKFDHP 450 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MEPFESESVS SSAKDPQLGE PSSPLSHHDH DHDPQAPDLN HLNQVDEALV GEIQNKLDLK 60 DGGETDDKGS NFVAGGEQLC TEVAEPEDGK GQGFDDDGDG DDGWNGGDEG CNWIENVNES 120 GSDKVGGDVD GVENKDERNS GRTQQYPLRP EAEDCAFYLK TGTCKFGFNC KFNHPVRRTN 180 QAMKENAGER DEPAERSGQT ECKYYLRSGG CKFGKACKFN HTRGKCTASP IVELNFLGLP 240 IRVGEKECVY YMRTGSCKFG ANCKFNHPDP TTVGGCDSPS GYSNGTSISL QGVSQSSIPS 300 WSSTRTLNES APLVPMILSP NPGVSPQNSE WNGYQAPVYL SERTLHPPST YVMNNPAMET 360 NVYMHHQNQM PVEEFPERPG EPECSYFLKT GDCKFKSNCK FHHPKNRIAR LPPCNLSDKG 420 LPLRPDQNVC THYSRYGICK FGPACKFDHP INPPPSSMPG LDQQSSFTNS ASVEVAEMGA 480 NGGASDANQQ SV

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MEPFESESVS SSAKDPQLGE PSSPLSHHDH DHDPQAPDLN HLNQVDEALV GEIQNKLDLK  60
DGGETDDKGS NFVAGGEQLC TEVAEPEDGK GQGFDDDGDG DDGWNGGDEG CNWIENVNES  120
GSDKVGGDVD GVENKDERNS GRTQQYPLRP EAEDCAFYLK TGTCKFGFNC KFNHPVRRTN  180
QAMKENAGER DEPAERSGQT ECKYYLRSGG CKFGKACKFN HTRGKCTASP IVELNFLGLP  240
IRVGEKECVY YMRTGSCKFG ANCKFNHPDP TTVGGCDSPS GYSNGTSISL QGVSQSSIPS  300
WSSTRTLNES APLVPMILSP NPGVSPQNSE WNGYQAPVYL SERTLHPPST YVMNNPAMET  360
NVYMHHQNQM PVEEFPERPG EPECSYFLKT GDCKFKSNCK FHHPKNRIAR LPPCNLSDKG  420
LPLRPDQNVC THYSRYGICK FGPACKFDHP INPPPSSMPG LDQQSSFTNS ASVEVAEMGA  480
NGGASDANQQ SV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-141	C3H family protein