PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363481.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 444aa MW: 47371.2 Da PI: 8.8146

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37	5.5e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H+p XP_027363481.1 49 PGVPNCVYYMRTGFCGYGARCRYNHPP 75 5789*********************97 PP
2	zf-CCCH	40.2	5.4e-13	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G++CkF H++ XP_027363481.1 95 GEPPCQYYLKTGNCKFGASCKFDHPK 120 579*********************96 PP
3	zf-CCCH	35.1	2.2e-11	271	297	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G C+++H++ XP_027363481.1 271 PGEPECQYYLRTGDCKFGLACRYHHPR 297 5799*********************96 PP
4	zf-CCCH	34.5	3.4e-11	316	340	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ XP_027363481.1 316 GVQPCAFYLQNGHCKFGSTCKFDHP 340 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MDLYGRSPAR NGSNPVNQPE WRSPTTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT 60 GFCGYGARCR YNHPPDRAAV AAAVRATGEY PERLGEPPCQ YYLKTGNCKF GASCKFDHPK 120 NGGGYLSHAP LNIYGYPLRQ PAGTSLPSSA PQFYQQVQSP TVPLAEQYGG ASTNLRVARP 180 PILPGSYVQG AYGPVLLSPG VVPFPGWSHY SAPVSPVLSP GAQPAVGATS LYGVTQLSSS 240 TSAFARPYTP LPSSTGPSGS SLKEQFFPER PGEPECQYYL RTGDCKFGLA CRYHHPRDQI 300 VARPLLSPIG LPLRPGVQPC AFYLQNGHCK FGSTCKFDHP LGSMRYSPSA SSLIDVPVTP 360 YPVGSLLSSL APLTTSSELR PELMSGSKKE SFSARIPSSG NSSGTSVGLI FSQGGSISLS 420 DVQLSSQSSA PLNSSRNRQS GEAR

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MDLYGRSPAR NGSNPVNQPE WRSPTTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GFCGYGARCR YNHPPDRAAV AAAVRATGEY PERLGEPPCQ YYLKTGNCKF GASCKFDHPK  120
NGGGYLSHAP LNIYGYPLRQ PAGTSLPSSA PQFYQQVQSP TVPLAEQYGG ASTNLRVARP  180
PILPGSYVQG AYGPVLLSPG VVPFPGWSHY SAPVSPVLSP GAQPAVGATS LYGVTQLSSS  240
TSAFARPYTP LPSSTGPSGS SLKEQFFPER PGEPECQYYL RTGDCKFGLA CRYHHPRDQI  300
VARPLLSPIG LPLRPGVQPC AFYLQNGHCK FGSTCKFDHP LGSMRYSPSA SSLIDVPVTP  360
YPVGSLLSSL APLTTSSELR PELMSGSKKE SFSARIPSSG NSSGTSVGLI FSQGGSISLS  420
DVQLSSQSSA PLNSSRNRQS GEAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-177	C3H family protein