PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363800.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 432aa MW: 47461.6 Da PI: 8.3339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	41	67	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_027363800.1 41 PGEPDCSYYIRTGLCRFGATCRFNHPP 67 5789*********************97 PP
2	zf-CCCH	38.1	2.5e-12	88	112	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G +CkF+H++ XP_027363800.1 88 QPECQYYLKTGTCKFGVTCKFHHPR 112 799********************96 PP
3	zf-CCCH	37.8	3.1e-12	134	158	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_027363800.1 134 EPECTYYLRTGQCKFGNTCKFHHPQ 158 589********************97 PP
4	zf-CCCH	37.9	2.9e-12	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_027363800.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP
5	zf-CCCH	37.5	4e-12	339	364	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+Ck+G++CkF H+ XP_027363800.1 339 PGEPLCVFYSRYGICKFGPSCKFDHP 364 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MEFHAAIPIS QPPLTQPQGS MWMMKLRPSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT 60 CRFNHPPNRK LAIATARMIG EFPERIGQPE CQYYLKTGTC KFGVTCKFHH PRDQAGVAGR 120 AALNILGYPL RLNEPECTYY LRTGQCKFGN TCKFHHPQPS NMMLSLRGSP VYPTVHSPTT 180 PGQQSYTGGI TNWSRASYIP SPRWQGPSSY TPLILPQGVV SVPGWSAYSS QIGAISTSDS 240 SQQTMGNNQT HGTSHQGELA SAGSHGAYSQ FRSATVPVGF YALQRDNIFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPMGLPLRPG EPLCVFYSRY GICKFGPSCK 360 FDHPTRLFTY NISASPSADA PSRHLLGSSS GTAELNLSSE GLVESSSAKP RRLSLSETRQ 420 IPSGDDDIDD DG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MEFHAAIPIS QPPLTQPQGS MWMMKLRPSE TMESGPYPER PGEPDCSYYI RTGLCRFGAT  60
CRFNHPPNRK LAIATARMIG EFPERIGQPE CQYYLKTGTC KFGVTCKFHH PRDQAGVAGR  120
AALNILGYPL RLNEPECTYY LRTGQCKFGN TCKFHHPQPS NMMLSLRGSP VYPTVHSPTT  180
PGQQSYTGGI TNWSRASYIP SPRWQGPSSY TPLILPQGVV SVPGWSAYSS QIGAISTSDS  240
SQQTMGNNQT HGTSHQGELA SAGSHGAYSQ FRSATVPVGF YALQRDNIFP ERPGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPMGLPLRPG EPLCVFYSRY GICKFGPSCK  360
FDHPTRLFTY NISASPSADA PSRHLLGSSS GTAELNLSSE GLVESSSAKP RRLSLSETRQ  420
IPSGDDDIDD DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein