PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027364316.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family C3H
Protein Properties Length: 227aa    MW: 23990.1 Da    PI: 9.1507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027364316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-103257227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC+ f     Ck+Gd+C+FaHg+
  XP_027364316.1 32 KTRLCNKFNTAEGCKFGDKCHFAHGE 57
                    8***********************96 PP
2zf-CCCH38.42.1e-12196220126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C +G+rC+FaHg
  XP_027364316.1 196 YKTKLCENFAK-GSCTFGERCHFAHG 220
                     9**********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MISVGGNPTV PQVGRNSVPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK CHFAHGEWEL  60
GRPTAPAYED PRVLGQMQSS RVGGRVEPPL ATHGVAASFG ASATAKISIN ASLAGAVIGK  120
NGVNSKQICR VTGAKLSIRD HDSDPNLRNI ELEGSFDQIK QASAMVHELI LNVSSVSGPS  180
TKNMTTQTSA PANNNYKTKL CENFAKGSCT FGERCHFAHG TGELRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-57C3H family protein