PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027365834.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family C3H
Protein Properties Length: 233aa    MW: 24545.2 Da    PI: 10.0999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027365834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_027365834.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                    7789******************** PP
2zf-CCCH36.21e-11200224126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +G+rC+FaHg
  XP_027365834.1 200 FKTKLCENFAK-GSCTFGERCHFAHG 224
                     69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MDFRKRGRPE AAVNLNGTVK KTKLEMESLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNLKPVAPP PSRNIAGRMS GRVEAPPGLA ASFGANSTAK ISVEASLAGA  120
IIGKGGVNSK QICRQTGAKL SIREHESDPN LRNIELEGSF EQIKEASNMV KELLLTISMS  180
APPKSTPGIP GAPAPPGSNF KTKLCENFAK GSCTFGERCH FAHGAAELRK PGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-105C3H family protein