PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027366093.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

RAV

Protein Properties

Length: 363aa MW: 39912.1 Da PI: 9.6821

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027366093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.6	7.6e-14	56	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_027366093.1 56 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNKEDEAARAYDIAAQRFRG 104 89**9888.8*****3.....5******99***********98 PP
2	B3	94.7	6.2e-30	182	288	1	94
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ tpsdv+k++rlv+pk++ae+h ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++gD v XP_027366093.1 182 FEKTVTPSDVGKLNRLVIPKQHAEKHfplgsiagerispcvA--ATKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAV 274 99*************************9888776666432..34899****************************************** PP EEEE-SSSEE..EE CS B3 81 vFkldgrsefelvv 94 F+++ e++l++ XP_027366093.1 275 RFYRSTGPERQLYI 288 *77556665655 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDGGSSTDDT TTSSDSLSAC LIPAKQSPPS TNTPSRVDLD GCGGSGEADS RKLPSSKYKG 60 VVPQPNGRWG AQIYEKHQRV WLGTFNKEDE AARAYDIAAQ RFRGKDAVTN FKPIAGAGEI 120 SDDAEAQFLN SHSKSEIVDM LRKHTYDDEL QQSKRGTSHR GGEIGKSTSR GMCDARAREQ 180 LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL GSIAGERISP CVAATKGVLL NFEDVGGKVW 240 RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDAVRFYRST GPERQLYIDC KGRSVNDVDA 300 NRGGLFIPVG PVVEPVQMVR LFGVNLLKLP GSDVVRVGCN GKRKEMELFA LECSKKFKIV 360 GAL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDGGSSTDDT TTSSDSLSAC LIPAKQSPPS TNTPSRVDLD GCGGSGEADS RKLPSSKYKG  60
VVPQPNGRWG AQIYEKHQRV WLGTFNKEDE AARAYDIAAQ RFRGKDAVTN FKPIAGAGEI  120
SDDAEAQFLN SHSKSEIVDM LRKHTYDDEL QQSKRGTSHR GGEIGKSTSR GMCDARAREQ  180
LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL GSIAGERISP CVAATKGVLL NFEDVGGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDAVRFYRST GPERQLYIDC KGRSVNDVDA  300
NRGGLFIPVG PVVEPVQMVR LFGVNLLKLP GSDVVRVGCN GKRKEMELFA LECSKKFKIV  360
GAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-133	RAV family protein