PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027367581.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

M-type_MADS

Protein Properties

Length: 159aa MW: 18408.6 Da PI: 10.0559

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027367581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.7	4.2e-15	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ tf kR++gi+KK +EL +LC++e++ ii s+ XP_027367581.1 11 IINDMSRKATFKKRKKGIIKKVSELTILCGIEACAIISSP 50 679999*******************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence
MTRKKVKLTY IINDMSRKAT FKKRKKGIIK KVSELTILCG IEACAIISSP FDSKAEVWPD 60 PKGAKQVIER YQNASVIDES KNVNQESFIM QRIAKAQEQA KKQREENCER EMTLSMFHYA 120 KIKMLPKHLT IEELKDLDKL IEKNMNDIQN KMAELSTVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLTYIINDMSRKATFKKRK
2	22	26	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-39	M-type_MADS family protein