PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027367772.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 18289.3 Da PI: 9.9705

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027367772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43	5.6e-14	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r+ tf kR++gi+KK +EL +LC+++++ +i s+ XP_027367772.1 11 ITDDATRKATFKKRKKGIIKKVNELTILCGIQACALIPSP 50 789999****************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MTRKKVKLAY ITDDATRKAT FKKRKKGIIK KVNELTILCG IQACALIPSP FDSKTEVWPD 60 PEGAKNVIER YQNTPMIDER KNVNQERFVM QWVAKTQDQL KKKRQENREK EMTLSMFQYM 120 HGETLPQHFT VEELKCLDNV IDKNMKEIEN KIAALT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLAYITDDATRKATFKKRK
2	22	26	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-33	M-type_MADS family protein